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java.lang.ObjectRecombinantXHTML
public class RecombinantXHTML
Recombinant XHTML definitions and utilities.
Nested Class Summary | |
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static class |
RecombinantXHTML.DOMResourceResolver
A resolver for Recombinant XHTML resources. |
static class |
RecombinantXHTML.DOMResourceResolverMin
A minimal resolver for Recombinant XHTML resources. |
Field Summary | |
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static String |
RECOMBINANT_XHTML_PUBLIC_ID
Public identifier of Recombinant XHTML documents. |
Method Summary | |
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Object |
abstract_transferMutant(Element embeddableAbstractSequence,
StringBuilder b)
Returns an abstract form of a gene's sequence, suitable for detecting mutations to record in ancestry. |
static Element |
ensureMetaData(Document document,
StringBuilder b)
Returns a Recombinant XHTML document's meta-data (tail) element; if necessary creating it (complete with a 'gg' element). |
static RecombinantXHTML |
i()
The single instance of RecombinantXHTML. |
static void |
write(Document document,
TransformerFactory transformerFactory,
Result result)
Writes a Recombinant XHTML document. |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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public static final String RECOMBINANT_XHTML_PUBLIC_ID
Method Detail |
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public static RecombinantXHTML i()
public static Element ensureMetaData(Document document, StringBuilder b)
b
- string builder to use, overwriting its existing contentDocumentRT.findMetaData(Node)
@ThreadSafe public static void write(Document document, TransformerFactory transformerFactory, Result result) throws TransformerException
document
- Recombinant XHTML document to writetransformerFactory
- to useresult
- output format; typically a 'new
StreamResult(file|stream)'
TransformerException
- from newTransformer, transform@ThreadSafe public Object abstract_transferMutant(Element embeddableAbstractSequence, StringBuilder b)
This abstract form is subject to change. Output sequences are not guaranteed to be accurately comparable unless generated in the same release of textbender.
abstract_transferMutant
in interface MutantAbstractor
embeddableAbstractSequence
- embeddable-abstract form
of the gene's sequenceb
- string builder to use, overwriting its existing content
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