textbender.a.u.chromography
Class ReferenceSeries

java.lang.Object
  ReferenceSeries

All Implemented Interfaces:

Serializable

@ThreadSafe
public class ReferenceSeries
extends Object
implements Serializable

A chromographic reference series.

See Also:

Serialized Form

Constructor Summary

ReferenceSeries(HostServiceRegistry.UniqueID origin, Element[] leafGeneArray, List<Element> gList)
Creates a ReferenceSeries.

Method Summary

String[]	leafLocusSetArray() Returns the series as an array of loci, in document order.
HostServiceRegistry.UniqueID	origin() Identifies the origin of the series.

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

ReferenceSeries

public ReferenceSeries(HostServiceRegistry.UniqueID origin,
                       Element[] leafGeneArray,
                       List<Element> gList)

Creates a ReferenceSeries.

Parameters:

origin - per origin()

leafGeneArray - array of leaf genes defining this series, in document order

gList - list of gene meta-data 'g' elements

Method Detail

leafLocusSetArray

public String[] leafLocusSetArray()

Returns the series as an array of loci, in document order. If a locus occurs multiple times, it is ordered by its first occurence.

Returns:

array of loci, each locus being unique

origin

public final HostServiceRegistry.UniqueID origin()

Identifies the origin of the series.